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Publications

Case ascertainment of a potential centrally-implemented, automated system for national surveillance of healthcare-associated infections in England 2016-2023

Journal article

Cregan J. et al, (2025), Eurosurveillance

An Electronic Health Record-Wide Association Study to identify populations at increased risk ofE. colibloodstream infections

Preprint

Pritchard E. et al, (2025)

Timeliness of a potential automated system for national surveillance of healthcare-associated infections in England.

Journal article

Quan TP. et al, (2025), J Hosp Infect

Timeliness of a potential automated system for national surveillance of healthcare-associated infections in England

Preprint

Quan TP. et al, (2025)

The effect of population selection criteria on model estimates and data missingness in electronic health record studies

Preprint

Pritchard E. et al, (2025)

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Journal article

Stoesser N. et al, (2024), JAC AMR

Development and validation of the Baseline Recurrence Risk in Cellulitis (BRRISC) score.

Journal article

L A Cross E. et al, (2024), J Infect, 88, 103 - 111

Health Record Hiccups - 5526 real-world time series with change points labelled by crowd-sourced visual inspection

Journal article

QUAN TP. et al, (2023), GigaScience

Penicillin Binding Protein Substitutions Co-occur with Fluoroquinolone Resistance in ‘Epidemic’ Lineages of Multi Drug-Resistant Clostridioides difficile

Journal article

DINGLE K. et al, (2023), mBio

daiquiri: Data Quality Reporting for Temporal Datasets

Journal article

Quan TP., (2022), Journal of Open Source Software, 7, 5034 - 5034

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity.

Journal article

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium. Electronic address: julian.knight@well.ox.ac.uk None. and COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None., (2022), Cell, 185, 916 - 938.e58

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.

Journal article

Vihta K-D. et al, (2021), Sci Rep, 11

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.

Journal article

Young BC. et al, (2021), Microb Genom, 7

Combining Charlson and Elixhauser scores with varying lookback predicated mortality better than using individual scores.

Journal article

Pritchard E. et al, (2021), J Clin Epidemiol, 130, 32 - 41

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Working paper

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None. et al, (2021)

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the hospital environment: a bacterial genome-wide association study

Preprint

Young B. et al, (2021)

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Preprint

Stoesser N. et al, (2021)

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients.

Journal article

Constantinides B. et al, (2020), Microb Genom, 6

Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli.

Journal article

Davies TJ. et al, (2020), Antimicrob Agents Chemother, 64

Investigation of the impact of the NICE guidelines regarding antibiotic prophylaxis during invasive dental procedures on the incidence of infective endocarditis in England: an Electronic Health Records study

Journal article

QUAN T. et al, (2020), BMC Medicine

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