Publications

Development and validation of the Baseline Recurrence Risk in Cellulitis (BRRISC) score.

L A Cross E. et al, (2024), J Infect, 88, 103 - 111

Health Record Hiccups - 5526 real-world time series with change points labelled by crowd-sourced visual inspection

QUAN TP. et al, (2023), GigaScience

Penicillin Binding Protein Substitutions Co-occur with Fluoroquinolone Resistance in ‘Epidemic’ Lineages of Multi Drug-Resistant Clostridioides difficile

DINGLE K. et al, (2023), mBio

daiquiri: Data Quality Reporting for Temporal Datasets

Quan TP., (2022), Journal of Open Source Software, 7, 5034 - 5034

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity.

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium. Electronic address: julian.knight@well.ox.ac.uk None. and COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None., (2022), Cell, 185, 916 - 938.e58

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.

Vihta K-D. et al, (2021), Sci Rep, 11

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.

Young BC. et al, (2021), Microb Genom, 7

Combining Charlson and Elixhauser scores with varying lookback predicated mortality better than using individual scores.

Pritchard E. et al, (2021), J Clin Epidemiol, 130, 32 - 41

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None. et al, (2021)

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the hospital environment: a bacterial genome-wide association study

Young B. et al, (2021)

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Stoesser N. et al, (2021)

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients.

Constantinides B. et al, (2020), Microb Genom, 6

Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli.

Davies TJ. et al, (2020), Antimicrob Agents Chemother, 64

Investigation of the impact of the NICE guidelines regarding antibiotic prophylaxis during invasive dental procedures on the incidence of infective endocarditis in England: an Electronic Health Records study

QUAN T. et al, (2020), BMC Medicine

Antimicrobial resistance surveillance: can we estimate resistance in bloodstream infections from other types of specimen?

Vihta K-D. et al, (2020)

Multi-omic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

Constantinides B. et al, (2020)

‘Caveat emptor’: the cautionary tale of endocarditis and the potential pitfalls of clinical coding 1 data: an electronic health records study

FAWCETT N. et al, (2019), BMC Medicine

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated Clostridium difficile PCR Ribotype 078.

Dingle KE. et al, (2019), MBio, 10

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

Davies T. et al, (2019)

A Candida auris Outbreak and Its Control in an Intensive Care Setting.

Eyre DW. et al, (2018), N Engl J Med, 379, 1322 - 1331

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Publications