The role of the gut microbiota in diet and health
- 8 September 2025 to 2 December 2025
- Project No: D26032
- DPhil Project 2026
- China Kadoorie Biobank (CKB) Clinical Trial Service Unit and Epidemiological Studies Unit (CTSU)
Background
The gut microbiota, which refers to the entire microbial community of the gut and includes at least 1000 distinct bacterial species and trillions of microbes, is strongly influenced by diet and plays a pivotal role in or human health and disease as it can regulate immune, metabolic and neurologic functions. Emerging evidence suggests that diet is a crucial factor in shaping the composition, diversity and functions of the gut microbiota, which can play a key connection between diet and health. Elucidating the gut microbial signatures and pathways linking specific dietary factors and health outcomes can provide valuable insights into disease aetiology, and contribute to the development of personalized nutrition strategies and novel therapeutic targets in future.
In the China Kadoorie Biobank study, metagenomics data on gut microbiome is available among 20,000 participants who participated in the 3rd resurvey in 2020-2021, together with a range of physical measurements and information on lifestyle factors, medical history and other health related aspects. This large and rich resource will enable us to investigate the potential relevance of different features of the gut microbiome (i.e. the diversity of microbial taxa), as well as their interplay, for a range of health conditions, including adiposity, BP, atherosclerosis, bone density, diabetes and the prevalence of chronic diseases including cardio-metabolic diseases, cancers, mental health disorders (e.g. depression and dementia).
research experience, research methods and skills training
The specific project will be developed according to student’s interest and aptitude, and may cover some of the following objectives:
To perform literature study to identify microbial markers of specific dietary exposure;
To explore the relationship between dietary information collected in the CKB and gut microbiome composition;
To examine the associations of diet-related microbial markers (identified in objective 1 & 2) with health-related physical & biochemical measures, e.g. adiposity, blood pressure, blood lipids, blood glucose, carotid intima-media thickness, and liver steatosis, as well as the incidence of chronic diseases in CKB.
To assess the interplay between diet-related microbial markers, microbial-derived & other metabolomic markers, proteomic markers and host genome on health-related conditions.
FIELD WORK, SECONDMENTS, INDUSTRY PLACEMENTS AND TRAINING
The project will be based within the CKB group in the Big Data Institute. There are excellent facilities and a world-class community of population health, data science, imaging process, and genomic medicine researchers. There will be opportunities to work with external research institutions.
PROSPECTIVE STUDENT
The ideal candidate will have a good first degree and MSc in epidemiology, statistics, or medicine. Candidates should have strong analytical skills for large-scale epidemiological data and with experience of working on omics data.

