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Publications

Utilising large and diverse bacterial genome datasets to improve the detection and identification of Streptococcus pneumoniae via PCR-based diagnostics

Ahlers FM. et al, (2025), Microbial Genomics

Understanding the population structure ofMoraxella catarrhalisusing core genome multilocus sequence typing (cgMLST) and a life identification number (LIN) code classification system

Yassine I. et al, (2025)

Development of a core genome multilocus sequence typing (cgMLST) scheme and life identification number (LIN) code classification system forStaphylococcus aureus

Hadjirin N. et al, (2025)

The importance of microbiology reference laboratories and adequate funding for infectious disease surveillance.

Shaw D. et al, (2024), Lancet Digit Health

Erratum: Development and implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme for Haemophilus influenzae

Krisna MA. et al, (2024), Microbial Genomics, 10

Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae

Krisna MA. et al, (2024), Microbial Genomics, 10

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure.

Jansen van Rensburg MJ. et al, (2024), Microb Genom, 10

Development and Implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme forHaemophilusinfluenzae

Krisna MA. et al, (2024)

Correction: Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.

Wyres KL. et al, (2023), BMC Genomics, 24

Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.

Shaw D. et al, (2023), Lancet Digit Health, 5, e582 - e593

Nasopharyngeal competition dynamics are likely to be altered following vaccine introduction: bacteriocin prevalence and diversity among Icelandic and Kenyan pneumococci.

Butler MEB. et al, (2023), Microb Genom, 9

Nasopharyngeal competition dynamics are likely to be altered following vaccine introduction: bacteriocin prevalence and diversity among Icelandic and Kenyan pneumococci

Butler MEB. et al, (2022)

Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium

Shaw D. et al, (2022)

Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data.

Brueggemann AB. et al, (2021), Lancet Digit Health, 3, e360 - e370

The Invasive Respiratory Infection Surveillance (IRIS) Initiative investigates changes in invasive bacterial infections during the COVID-19 pandemic

BRUEGGEMANN A. et al, (2021), The Lancet. Digital Health

Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review.

Diallo K. et al, (2021), EBioMedicine, 65

The Invasive Respiratory Infection Surveillance (IRIS) Initiative reveals significant reductions in invasive bacterial infections during the COVID-19 pandemic

BRUEGGEMANN A., (2020), MedRxiv

The global meningitis genome partnership.

Rodgers E. et al, (2020), J Infect, 81, 510 - 520

State-of-the-art in the pneumococcal field: Proceedings of the 11th International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD-11).

Kwambana-Adams BA. et al, (2020), Pneumonia (Nathan), 12

Prophages and satellite prophages are widespread in Streptococcus and may play a role in pneumococcal pathogenesis.

Rezaei Javan R. et al, (2019), Nat Commun, 10

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