Publications

Rapid diagnosis of common, undetected, and uncultivable bloodstream infections from positive blood cultures using Oxford Nanopore sequencing: a metagenomic pipeline analysis

Govender KN. et al, (2026), The Lancet Microbe, 101333 - 101333

Data for Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains

Pople D. et al, (2026)

Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains

Pople D. et al, (2026), Nature Communications

The potential of a centrally implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023-2024.

Cregan J. et al, (2026), J Hosp Infect, 169, 5 - 14

Clinical validation of a novel metagenomic nanopore sequencing method for detecting viral respiratory pathogens: diagnostic accuracy study

Sanderson ND. et al, (2026)

Treatment of enteric fever (typhoid and paratyphoid fever) with cephalosporins: a Cochrane review

Kuehn R. et al, (2026), Emergencias, 38, 66 - 68

The cumulative incidence and infection hospitalization risk of SARS-CoV-2 by variant: a longitudinal study in England.

Gaughan C. et al, (2026), Am J Epidemiol, 195, 188 - 197

How ready are we to use artificial intelligence in our fight against antimicrobial resistance? An ESGAID and EAAS perspective.

Giacobbe DR. et al, (2026), Expert Rev Anti Infect Ther, 24, 39 - 61

Data-Driven Framework to Maximise the Value of Testing in Epidemic Contexts

Fearson E. et al, (2026)

Benchmarking transformer-based models for medical record de-identification in a single center multi-specialty evaluation.

Kuo R. et al, (2025), iScience, 28

Concurrent prediction of in-hospital mortality and length of stay using single-task, multi-class, and multi-task machine learning

Wei J. et al, (2025), BMJ Digital Health and AI

Plasmid dynamics driving carbapenemase gene dissemination in healthcare environments: a nationwide analysis of closed Enterobacterales genomes.

Koh V. et al, (2025), Nat Commun, 16

Letter: Generative AI Dual-Use Risks in Infectious Diseases: An Overlooked Challenge for Global Health

Rizzo A. et al, (2025), NEJM AI, 2

An electronic health record-wide association study to identify populations at increased risk of E. coli bacteraemia.

Pritchard E. et al, (2025), J Infect, 91

Machine learning and statistical inference in microbial population genomics.

Sheppard SK. et al, (2025), Genome Biol, 26

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