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Publications

Developing a novel approach to complex evolution of antimicrobial resistance via mobile genetic elements from a persistent environmental biofilm

Mathers A. et al, (2024)

Epidemiology and excess mortality of antimicrobial resistance in bacteraemias among cancer patients: a cohort study using routinely collected health data from regional hospital trusts in Oxford and Oslo, 2008-2018

Danielsen AS. et al, (2024)

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Stoesser N. et al, (2024), JAC AMR

Transformers and large language models are efficient feature extractors for electronic health record studies

Yuan K. et al, (2024)

'Bloodstream infection': A valuable concept we should keep in our toolbox.

Danielsen AS. et al, (2024), J Infect, 89

Retrospective analysis of hospital electronic health records reveals unseen cases of acute hepatitis with unknown aetiology in adults in Oxfordshire.

Tan CCS. et al, (2024), BMC Public Health, 24

Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.

Pouwels KB. et al, (2024), Nat Commun, 15

The novel 2024 WHO Neisseria gonorrhoeae reference strains for global quality assurance of laboratory investigations and superseded WHO N. gonorrhoeae reference strains-phenotypic, genetic and reference genome characterization.

Unemo M. et al, (2024), J Antimicrob Chemother

Immunogenicity of COVID-19 vaccines in patients with follicular lymphoma receiving frontline chemoimmunotherapy.

Lim YJ. et al, (2024), Br J Haematol

Detecting changes in population trends in infection surveillance using community SARS-CoV-2 prevalence as an exemplar.

Pritchard E. et al, (2024), Am J Epidemiol

Distinct patterns of vital sign and inflammatory marker responses in adults with suspected bloodstream infection.

Gu Q. et al, (2024), J Infect, 88

Nanopore sequencing of influenza A and B in Oxfordshire and the United Kingdom, 2022-23.

Cane J. et al, (2024), J Infect

Leveraging transformers and large language models with antimicrobial prescribing data to predict sources of infection for electronic health record studies

Yuan K. et al, (2024)

No evidence of difference in mortality with amoxicillin versus co-amoxiclav for hospital treatment of community-acquired pneumonia

Wei J. et al, (2024), Journal of Infection

Distinct patterns of vital sign and inflammatory marker responses in adults with suspected bloodstream infection.

Gu Q. et al, (2024), J Infect

SARS-CoV-2, influenza A/B and respiratory syncytial virus positivity and association with influenza-like illness and self-reported symptoms, over the 2022/23 winter season in the UK: a longitudinal surveillance cohort.

Dietz E. et al, (2024), BMC Med, 22

Target enrichment improves culture-independent detection of Neisseria gonorrhoeae and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing.

Street TL. et al, (2024), Microb Genom, 10

System-wide approaches to antimicrobial therapy and antimicrobial resistance in the UK: the AMR-X framework.

AMR-X Collaborators None., (2024), Lancet Microbe

Genomic epidemiology of Candida auris introduction and outbreaks in the United Kingdom

Kappel D. et al, (2024)

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population

Jia W. et al, (2024), Nature Communications

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