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Publications

K-mer based prediction of Clostridioides difficile relatedness and ribotypes.

Moore MP. et al, (2022), Microb Genom, 8

Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection.

Street TL. et al, (2022), J Clin Microbiol

Divergent trajectories of antiviral memory after SARS-CoV-2 infection.

Tomic A. et al, (2022), Nat Commun, 13

Antibody responses and correlates of protection in the general population after two doses of the ChAdOx1 or BNT162b2 vaccines.

Wei J. et al, (2022), Nat Med

Infection prevention and control insights from a decade of pathogen whole-genome sequencing.

Eyre DW., (2022), J Hosp Infect

Comparison of two T cell assays to evaluate T cell responses to SARS-CoV-2 following vaccination in naïve and convalescent healthcare workers

Phillips E. et al, (2022)

Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants.

Eyre DW. et al, (2022), N Engl J Med

COMPARISON OF WHOLE GENOME SEQUENCE-BASED METHODS AND PCR RIBOTYPING FOR SUBTYPING OF Clostridioides difficile.

Baktash A. et al, (2021), J Clin Microbiol

Tracking the Emergence of SARS-CoV-2 Alpha Variant in the United Kingdom.

Walker AS. et al, (2021), N Engl J Med

Time of Day of Vaccination Affects SARS-CoV-2 Antibody Responses in an Observational Study of Health Care Workers.

Wang W. et al, (2021), J Biol Rhythms

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.

Vihta K-D. et al, (2021), Sci Rep, 11

Real-world evaluation of AI driven COVID-19 triage for emergency admissions: External validation & operational assessment of lab-free and high-throughput screening solutions

Soltan A. et al, (2021), The Lancet. Digital Health

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

Wei J. et al, (2021), Nature Communications, 12

The burden and dynamics of hospital-acquired SARS-CoV-2 in England

Cooper B. et al, (2021)

Parenchymal involvement on CT pulmonary angiography in SARS-CoV-2 Alpha variant infection and correlation of COVID-19 CT severity score with clinical disease severity and short-term prognosis in a UK cohort.

Tsakok MT. et al, (2021), Clin Radiol

Improving patient flow during infectious disease outbreaks using machine learning for real-time prediction of patient readiness for discharge

CLIFTON D., (2021), PLoS One

Probabilistic modelling of effects of antibiotics and calendar time on transmission of healthcare-associated infection.

Laager M. et al, (2021), Sci Rep, 11

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population.

Wei J. et al, (2021), Nat Commun, 12

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population.

Wei J. et al, (2021), Nat Commun, 12

Changes in paediatric respiratory infections at a UK teaching hospital 2016-2021; impact of the SARS-CoV-2 pandemic.

Lumley SF. et al, (2021), J Infect

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